CA SRA - Correspondence Analysis - Arbitrary image reconstitution

(3/21/13)

PURPOSE

Reconstitute complete images using selected factors and arbitrary coordinates.
See: Classification and Clustering Tutorial for further info.   Example.

SEE ALSO

CA S [Correspondence Analysis - Solution]
CA SM [Correspondence Analysis - Show Map & Eigen Values]
CA SRD [Correspondence Analysis - Reconstitute Differential images]
CA SRI [Correspondence Analysis - Reconstitute Importance images]

USAGE

.OPERATION: CA SRA

.CORAN/PCA FILE PREFIX: coran_t_
[Enter the prefix for the files created in 'CA S'.]

If the source 'CA S' run utilized PCA, the following question will appear:

.SUBTRACT AVERAGE IN PCA RECONSTRUCTION? (N/Y): N

.FACTORS TO BE USED: 2-4
[Enter the factors to be used for image reconstitution. Note that the numbers have to be less that the number of images and less or equal to the number used in 'CA S'.]

.COORDINATES FOR EACH FACTOR SELECTED: 0.0013, -0.0011, 0.0004
[Enter coordinates related to the scales of the factorial axes in the Results file from 'CA S' or from factorial maps produced by 'CA SM'.]

.OUTPUT FILE: SRI014
[Enter name for the the output file created here.]

NOTES

  1. For a detailed explanation of concepts used for CORAN here see: J.P. Bretaudiere and J. Frank (1986) J. Microscopy 144:1-14. Importance images are defined in J. Frank and M. van Heel (1982) J. Mol. Biol. 161:133-137.

SUBROUTINES

JPMSK2

CALLER

UTIL1

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