(Updated 2012 May 21)

Doc file formats


Notes


params


;              MICROGRAPH 

sel_micrograph


;       TRANSFER      R,PX^-1      R,A**-1
  1. Power_Spectra/power/filtctf{****[mic-num]}
  2. Reconstruction/docmatched_vol001

;               XCOORD       YCOORD       MIC_SLICE   PEAK_HEIGHT 

Particles/coords/sndc{****[mic-num]}


;       MIC_SLICE    GLOBALPART

Particles/good/ngood{****[mic-num]}


; KEY:MIC_SLICE /  GLOBAL_PARTICLE_NUM 

Particles/win/globalmic{****[mic-num]}


;        APSHSLICE     MIC_SLICE     APSHGROUP      MICNUM       GLOBALNUM 

Alignment/apsh_grp_particles_{***[group-num]}


; KEY=GLOBAL / GRPSLICE     MICSLICE     GROUPNUM    MICROGRAPH

Alignment/global2group


;                   PSI,        THE,         PHI,         REF#,       EXP#,     CUM. {INPLANE,    SX,         SY},        NPROJ,        DIFF,       CCROT,      INPLANE,        SX,         SY,         MIR-CC

Alignment/align_01_{***[grp]}


; /     VIEWSLICE   GLOBAL_NUM    GRPSLICE      CC_ROT       MIRROR      GROUPNUM       VIEW
  1. Averages/Views/sel{***[view-num]} created by: selectbyview.spi
  2. Averages/Views/prj{***[view-num]}/sortsel created by: selectbyview.spi
    Used by:
  3. Averages/combinedparts created by: histallcc.spi
  4. Reconstruction/select/prj{***[view-num]}/goodsel created by: combinegoodclasses.spi
    Used by:
  5. Averages/combinedgood
  6. Averages/Views/bestsel{***[view-num]}

;       VIEWSLICE    GLOBAL_PART    CC_COEFF        CCROT      MIRROR_FLAG     GRP_NUM      GRP_SLICE

Averages/Views//prj{***[view-num]}/docclass{***[class-num]}


;       CLASSNUM       CCC        VARIANCE_SD 

Averages/Views//prj{***[view-num]}/listclasses


;      NORM'D FREQ    DPR        FSC        FSCCRIT     VOXELS

Groups/grp{***[grp]}/doccmp001, doccmp001
Groups/grp{***[grp]}/docfscmasked001, docfscmasked001